NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120127_10028618

Scaffold Ga0120127_10028618


Overview

Basic Information
Taxon OID3300013503 Open in IMG/M
Scaffold IDGa0120127_10028618 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A23_5cm_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1029
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001275Metagenome / Metatranscriptome733Y
F016337Metagenome / Metatranscriptome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0120127_100286181F001275N/AMAAGCAVEEKESETAYPERLCQGVSPGDEPCDYPATVHCSTCSRWFCEAHAQDEVWHTCVLSFGDEGGEA*
Ga0120127_100286182F016337N/AMWISANCGCLRLQCSGGEEMQNTITSVLGFLMLFSAGPRQELPRELKGGGHLLGETAEHFFSEGAVGQLLRACEAGDWKAVKQLAKAVDPDSKPNARDICAKAVLAKKQATSGVRQEYVGGDDQTMRRDTFTLEGGYLVKIDMVFNAPSTDVGGYHPKYFGELFKGLQEAYGEPSKSYSEPVFDVYGAKYDAHRAEWMGKQDVITIIEQPRQKRSNRNSRGNAGRTKPGNKRAQDCESPAIRNAPKF*
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