NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117783_104840

Scaffold Ga0117783_104840


Overview

Basic Information
Taxon OID3300013674 Open in IMG/M
Scaffold IDGa0117783_104840 Open in IMG/M
Source Dataset NameCoral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_NLN_DNA_SISPA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAustralian Institute of Marine Science
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)801
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Coral Tissue → Coral Viral Communities From The Great Barrier Reef, Australia

Source Dataset Sampling Location
Location NameAustralia: Great Barrier Reef
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057998Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0117783_1048401F057998GGAMIDGEVAFVSICFVLFVSTLLIAFSFRKKKMGTDIWTGKGIIADESEVVAFINGKNKKLVIKTCQEFYEELLDQYKEEPEEWRKQLVDDFDGIYNISTKATIAEIRRALQSVVKVEGEVSKYGDCYVEHSEYLMDLFNKLFEACDLDIPYLDNVVAFGSARYNGWDVPLGVACFVFSSDQCFVRTLSEEGKNLKKMIGHCEESEWTDISY*
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