Scaffold Ga0116844_1011395

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0116844_1011395

Scaffold Ga0116844_1011395

Overview

Basic Information
Taxon OID	3300013744 Open in IMG/M
Scaffold ID	Ga0116844_1011395 Open in IMG/M
Source Dataset Name	Oral microbial communities from fossilized dental plaque from Dalheim, Germany - S8-Shot-G12-calc
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Oklahoma
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	776
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Fossilized Dental Plaque → Oral Microbial Communities From Fossilized Dental Plaque From Dalheim, Germany

Source Dataset Sampling Location
Location Name	Germany: Dalheim
Coordinates	Lat. (^o)	51.565093	Long. (^o)	8.849015	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0116844_10113951	F033081	AGG	MAWLFRRAMPRDTRPTFVWPNLARAIGDARYFDQRWLTAIATVLIIVTIATIKVLLMIPGLDSSVVELLTSIFETFLPARWATGAAWFVGAAGVFLIGDFTNYTSSQRSLHNAKATRCEAYNMLLLFALLEEQAFRSGSEKWSWRERARASVCFGLLHITNIWYSLAAGVALSATGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALNLIA

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