NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120126_1000020

Scaffold Ga0120126_1000020


Overview

Basic Information
Taxon OID3300013831 Open in IMG/M
Scaffold IDGa0120126_1000020 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A21_5cm_6M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3016
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004294Metagenome / Metatranscriptome445Y

Sequences

Protein IDFamilyRBSSequence
Ga0120126_10000203F004294N/AMRLEFGDEPPPEICLPDKPLSDIQDDASRRFIQDAPYIIYRRYHLAQESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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