NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181471_100072

Scaffold Ga0181471_100072


Overview

Basic Information
Taxon OID3300013865 Open in IMG/M
Scaffold IDGa0181471_100072 Open in IMG/M
Source Dataset NameClean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5p-11 gowning area SPAdes reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24877
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (38.46%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Source Dataset Sampling Location
Location NameUSA: Jet Propulsion Laboratory, Pasadena, California
CoordinatesLat. (o)34.1Long. (o)-118.1Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017428Metagenome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0181471_1000722F017428AGGMTMDIEGVSTHMDFEVIEIFDDNNPCSMLLGIEWATDMNGVINLKRQKMIFEKKSLCVIVPLDPVEGSHYIEPVQDEDNDDELD*
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