NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117792_1001626

Scaffold Ga0117792_1001626


Overview

Basic Information
Taxon OID3300013941 Open in IMG/M
Scaffold IDGa0117792_1001626 Open in IMG/M
Source Dataset NameEpidermal mucus viral and microbial communities from European eel in Spain - water from Alfacada pond (Ebro delta)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Valencia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3018
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus → Epidermal Mucus Viral And Microbial Communities From European Eel In Spain

Source Dataset Sampling Location
Location NameSpain: Alfacada pond
CoordinatesLat. (o)40.647955Long. (o)-0.738702Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F025485Metagenome / Metatranscriptome201Y
F031456Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0117792_10016265F025485N/AMNNARKFLPVIIGSLVAVLVFWISRKMRKSNQANTERSTILEKAREAKLAKSILKKSENEESTTYSEISA*
Ga0117792_10016267F013634N/AMCKSEDKDYMAIQLAPLVGAGLGALQQSKVNKALEGTKTFTRPKTLFGKLIGGISGRTAAFEAQEMSKSAPISESVLNSFAGAAAPSTQMAKQSTPITGGISFGGEAKQRTYLPFAIIAGVVAVFYFLFGKKKRGGRRR*
Ga0117792_10016268F031456N/AFLVGNSGVPTQFLDNFSVVTSGVQLMSITSAVRLTALAKYDSGAQLADPNPPGTAISTTTSYLRLATGRINKATTITGNNPTAGIEPAFAASTNISSVARRAVEQSINPSANATFDNFEALFFDPTNVLRAQITFANGYSDEYGNAEMRALYSRYHISDSFGGLEGLTCISADSGAGLISQVVLYNGAGGSTVVLKSDYVQI*
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