NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117792_1015611

Scaffold Ga0117792_1015611


Overview

Basic Information
Taxon OID3300013941 Open in IMG/M
Scaffold IDGa0117792_1015611 Open in IMG/M
Source Dataset NameEpidermal mucus viral and microbial communities from European eel in Spain - water from Alfacada pond (Ebro delta)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Valencia
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)891
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus → Epidermal Mucus Viral And Microbial Communities From European Eel In Spain

Source Dataset Sampling Location
Location NameSpain: Alfacada pond
CoordinatesLat. (o)40.647955Long. (o)-0.738702Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001588Metagenome / Metatranscriptome667Y
F021995Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0117792_10156112F001588AGGAGMQTTNNYVFLTAESAAIVVKVNNVVVAADVQTADALVEVFLQHNVNVLTDTIMCSSTIDFATEEGFATDSCAHNIIDAALEQLV*
Ga0117792_10156113F021995N/AMYAVVDFDRQQTHFFTSFQSASSFIAQYPVISRTVVVDLSQQQPAVEKL*

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