NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117810_1000037

Scaffold Ga0117810_1000037


Overview

Basic Information
Taxon OID3300014028 Open in IMG/M
Scaffold IDGa0117810_1000037 Open in IMG/M
Source Dataset NameHuman gut microbial communities from patients with symptomatic atherosclerosis - Chalmers University of Technology - 32
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChalmers University of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57514
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (18.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut → Human Gut Microbial Communities From Patients With Symptomatic Atherosclerosis - Chalmers University Of Technology

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032312Metagenome / Metatranscriptome180N
F044555Metagenome / Metatranscriptome154N
F080163Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0117810_100003718F032312N/AMARIKDYDEDLSAPKLLREMARESKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCFGFTGFKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS*
Ga0117810_100003719F080163N/AMKTIKFLQESFETKERFQQEISFRYSYNRDTVESIDFRINRRNIRYFYEAMQNFENSLVNEFREKKSNFCDAKQFLESINNIDKIVFVIITYMKTYFDFYNKDYSKISLHVHLVQFEFTTSVLIQGFYDYSHRDLSFSTNQVLDSEIELLQEKLDLIREEICELIGVDPNLEKQSHEDNYVFNLSIKSHNQIGFFLQATEL*
Ga0117810_100003722F044555N/AMKTTNPSSRITLSQNGNKILTCKVYKEPNYILSMSNEEILELISGLDYMGNLPTVPDPEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLVDELKDTISRFQAQYNIQEINPYLQDLLQNPEDLVSLSQHNK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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