Scaffold Ga0120109_1000196

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120109_1000196

Scaffold Ga0120109_1000196

Overview

Basic Information
Taxon OID	3300014052 Open in IMG/M
Scaffold ID	Ga0120109_1000196 Open in IMG/M
Source Dataset Name	Permafrost microbial communities from Nunavut, Canada - A23_35cm_12M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Tennessee
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16129
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (47.06%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Canada: Axel Heiberg Island, Nunavut
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)	.35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020585	Metagenome / Metatranscriptome	223	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0120109_10001963	F020585	AGGA	MINQQDQWFNQLRREESARRTLRYSLYQALEQVERLLEADMMEVPIEMQARLRQIVEAVDPQLAYRIDQMGASALDIQDLIFEAQDRLIKQVRSDPY*

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