NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134361_100137

Scaffold Ga0134361_100137


Overview

Basic Information
Taxon OID3300014088 Open in IMG/M
Scaffold IDGa0134361_100137 Open in IMG/M
Source Dataset NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe George Washington University (GWU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4555
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Maryland
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F043991Metagenome155N
F051214Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0134361_1001372F018385GGAGMAEYENQWGPYKEHSIERDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0134361_1001374F051214AGGAGMPGKIVAHDTHLRIDTEFIDLKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0134361_1001375F043991GAGMSKKTPSVIDYFSLNGDVVEEANEFDGISLDDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTPNIIYADILFTGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA*
Ga0134361_1001378F027205N/AMRAVKESEEFERKALKEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK*
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