NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134338_100001

Scaffold Ga0134338_100001


Overview

Basic Information
Taxon OID3300014105 Open in IMG/M
Scaffold IDGa0134338_100001 Open in IMG/M
Source Dataset NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_017
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe George Washington University (GWU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40767
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (86.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Maryland
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F027205Metagenome195N
F051214Metagenome144N
F071329Metagenome122N
F081456Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0134338_10000110F027205AGGAVASRLIVSADDILKAVKESEEFERKALKEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELANEIEKDLFAFMDYLLDEYDIPRRIRK*
Ga0134338_10000115F051214AGGAGMPGKIVPYETHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYVYNNREYQIACEFLRQIMHDKIDLNKEWLA*
Ga0134338_10000116F071329AGGAMLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVEEARDHIEIED*
Ga0134338_10000118F018385GGAGMADLINSWLPYQELSIEKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFSHDGMNELVFMPGSRRRIVSQLSLDNSGKKEVD
Ga0134338_10000129F081456AGGAGMFEEPPIYYILISLIFLIVFGAISFATWMVWLTYISFFAKLVVTAIGFLLCAMTVILYTISAE*
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