NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134350_1000009

Scaffold Ga0134350_1000009


Overview

Basic Information
Taxon OID3300014137 Open in IMG/M
Scaffold IDGa0134350_1000009 Open in IMG/M
Source Dataset NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_208
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe George Washington University (GWU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101799
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (55.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Maryland
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046433Metagenome151N
F095633Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0134350_1000009104F046433GAGMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIEMTKHYLPDYMENCAKELIDELAFLGMPELNFAANALAKRLRHHLEIDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQVRERISGFEVDNDPESHEASVLVMAASGDYLDNGISAYSRYGGTIYPVEACYVLKNSSDAGGVSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGERIDDLSLPALANIVRPYRNGKNFDGLSRFRQLLEKE*
Ga0134350_100000975F095633AGGAGMKNYENFTEVGRGEGLTEGELRTMGTLAVKATEELKKTTIRKEAVLLGSVPFGSWDEFAKAVQEMAAHKMTAYSYEPIPVKINTKRLIATAFLDDGGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN*
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