NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181613_1082456

Scaffold Ga0181613_1082456


Overview

Basic Information
Taxon OID3300014149 Open in IMG/M
Scaffold IDGa0181613_1082456 Open in IMG/M
Source Dataset NameIn situ water column microbial community from the vent pool of Chocolate Pots hot spring, Yellowstone National Park, Wyoming, USA - CP Vent Pool
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)891
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Anoxic, Neutral-Ph, Fe/Si-Rich Hot Spring Water → In Situ Water Column Microbial Community From The Vent Pool Of Chocolate Pots Hot Spring, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameChocolate Pots hot springs, Yellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.7101Long. (o)-110.7413Alt. (m)Depth (m).05 to .1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057476Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0181613_10824562F057476GAGMNEDETLTEPSAESLLEIPEQDFSRAIRPNRYANLRGTFQHAVFVDRAIWEHFGGEDRILEVLRLLVDIAKKRPA*
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