NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181539_1000024

Scaffold Ga0181539_1000024


Overview

Basic Information
Taxon OID3300014151 Open in IMG/M
Scaffold IDGa0181539_1000024 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)143042
Total Scaffold Genes161 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (53.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005111Metagenome / Metatranscriptome411Y
F013739Metagenome268Y
F050838Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0181539_1000024159F050838GGAMSIYWVRSYYGKPGKITEYLKWLNSDRAKLLASQIEKETGIKYLNTYIAIQSFGDYDAEDWWAAPNWASLDKMRDCNALAEWTLNSWDLIDQTRPQKSRMMRTINEVKTIEKPEKWTELL
Ga0181539_100002450F005111AGCAGMIFMTTDVEFDNRIHDLVKRESECDDLFKDIKNGNGENSLRYLTLRDACKELRKGILRSAMSAGLTRESINMKIKEARNETIAADGKQTRKNQ*
Ga0181539_10000249F013739GGAGGMARESMLTQKSIMADDTLSLLTGQPKGALLSYTELTKSMHQYIRTKQLRLKACPNCKTQVPGYATFCDKCGKDIAPVPAVAK*
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