NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181539_1000219

Scaffold Ga0181539_1000219


Overview

Basic Information
Taxon OID3300014151 Open in IMG/M
Scaffold IDGa0181539_1000219 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68581
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (54.39%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000833Metagenome / Metatranscriptome871Y
F001355Metagenome / Metatranscriptome716Y
F002585Metagenome / Metatranscriptome546Y
F009619Metagenome / Metatranscriptome315Y
F039234Metagenome / Metatranscriptome164Y
F064951Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0181539_100021913F002585N/AMPRSCFFWAKLAFPVCAILSGAILSPMLSHAEKQKPLPAVRWTAGAPGCAFERGDDGRYRWTMTGKDLTVTLLVDSQELTKSRRRFYHLLGAYVSATYTGQDKFEFPADVRIDFVRHHDVLEAYMDPTELSHRLQSDIDTLVFETERQIKKNPKITEEKTARLREYEKEAAEFIEFVGTQNLDPAGATLNPGNPEAHGWVFFATSNKWIGPWKDREDFILGVWMKDKVWQFPFSLPPTEGDLILRKPAD*
Ga0181539_100021915F064951N/AMNAKTELSAPKRRTRAEVQQLVAEFVSSGMRRSEPCRSRGLSFGTLDRHLKKRRWKRKGAPADGRLVPVKLAAKKSP*
Ga0181539_100021928F039234N/AMMTLSGERLSVIHDAFKALAGILSICAIFSGTFSRASCSVDIVIVNGQVEHSPPKATVRVQLVYPNQNMGESGDVTVEGGSFRIEIPFLTQSRAPVLGGSLREKCDRKPKTVVVTLIEADQEYDRVSLDLAKDFKMADPSAYALRSQILLHGPPSTPPIR*
Ga0181539_10002194F000833N/AVFPAQMMLAGETASAMLYTNGEAWLNGSEVPKSVAVFSGDMLQTRPDSTASIQSNGSNVMVLADSLVKFEGPAVELEHGSVRVTTSRGMAARAGDVTVKPASDSWTEFQVTDVDGRVQIAANKGDLTVQDDKGTTTVTQGQQTTRDDTADTEKKKKKRRRGGGAATAAGGGIMSSTPAIVGGLVAVGGVGVWVWLQQEPPMSAACPTVPCQ*
Ga0181539_100021947F009619N/AMGGFSILTNRKRAVVALAHSVVFLLVAVRQMVAANSAAGIWVPSTVSRGTWILCGIFVIVSAILLWLLVISRGWMEKFYFGFCTISATSGLVRTAAGDQAFHAGLYIRVVMLVSAVLVGLLIVRLHFRPRSHVESEYAEGSF*
Ga0181539_100021954F001355GAGGMPMDYPIIKRSSCSVCGLDTFRHSGWFLVVENRWLDRLKILSWHSSLAMQKDMKSVCCRQHLKTLIAHWLTQASLRLPPAHDPPLPIGSDPTLTDIDLGPHSLGRLVGELAVHRESFSRVWSGSPAALECILDALITIGAENKPHALECQLFDLPTESSHGLSLQ*
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