NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181539_1030951

Scaffold Ga0181539_1030951


Overview

Basic Information
Taxon OID3300014151 Open in IMG/M
Scaffold IDGa0181539_1030951 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2766
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005296Metagenome405Y
F009261Metagenome320Y
F012316Metagenome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0181539_10309511F009261GGAGGMILTPSNTGNLVAGAGLGIFAWGAFLKADKVPWLKKLMTTRRKELSLDWINRNKGISLLGLEAINLGIHGILSANAVIFALGNTILNIFMLWAFLPFRTARAEKQRVQNVLKGVA*
Ga0181539_10309512F005296GGAGMAPWLLWFLPSFEAGFWSALIAGKVRDQGKIRELLIYGRPARTCLPVIDERLRKVAGTPTKSQAFAARRIAAGLRWLANTRAMDYAILLGLKRAWPKGQTISAEVKMCL*
Ga0181539_10309513F012316AGAAGMPVSSALLSLLHREENMSTTIIDHPAGPKRRCCKVWEGLRSLGTRGISAVNRWHRHQDQSALERALARIIETANGHRAKGLPKGAPAYVVLRDKADARIQVFAMKWGVDIAIIKAQAPALADLDSLCVPDTQIPSGLKLLAALLGTILSLVLLGAASGLVHAGHDWVMRFVGR*
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