NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134075_10130670

Scaffold Ga0134075_10130670


Overview

Basic Information
Taxon OID3300014154 Open in IMG/M
Scaffold IDGa0134075_10130670 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: Angelo Coastal Reserve, California
CoordinatesLat. (o)39.7181Long. (o)-123.6527Alt. (m)Depth (m).4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007745Metagenome345Y
F018154Metagenome236N
F029070Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0134075_101306701F007745GAGGMSRSEGLEAKDPFLRDYKQSLQDVIKGMKKIGPSGLQLLVQEMIRSRWIKDRRASYPYEVAWVFDRREEAISGIMKKLEEGGDIEPAGLGRGKKGPVNPYKPRTLRLPKQTIRKPSKPRRKDV*
Ga0134075_101306702F018154N/AVVVEAEIVKLRKFQEFLRTEDKLVFQDLLNQCKLYAPYASTMVSTIKEVPLLFSMLFGQHKKIIELEKKILMLETLATKTETTVPARAIQGPAEKAEANIVPTNRFPC*
Ga0134075_101306703F029070N/AAKVSNKMKFMQMLDSQTYRVLQKEAKNRGASIQELLRTVIIPDWLSEHRRRERP*
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