NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181518_10000051

Scaffold Ga0181518_10000051


Overview

Basic Information
Taxon OID3300014156 Open in IMG/M
Scaffold IDGa0181518_10000051 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)130031
Total Scaffold Genes152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)113 (74.34%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000408Metagenome / Metatranscriptome1172Y
F000552Metagenome / Metatranscriptome1033Y
F059669Metagenome133Y
F079694Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0181518_10000051147F000408N/AVRGRDRRGFAFEEETASENLCRSGAAFHTRFDLAIGSNLEIRIPMQGYPSRRYENDFETQGRVVHVSDSQPDGERLVGVQFVGPRFQRVFRSESAA*
Ga0181518_1000005120F000552AGGAGMGAMRRKMVWLKKQDFQGWACSECAWAFNPTGPVVGESIDEMKTHYEQQRDKEFTSHVCAEHPRATKNPR*
Ga0181518_1000005158F079694AGGAGMPTYQNATPPSALYPGDVGYSWNNEAFPGATTSGSQFALSTPGGYAPETGFAVRWQTIYGSAPSAVNIRLQGAMADVDAEYMDIDTSTNTAGEGRQVTGVQARFLRIKLYSSTGGSGLTAKILV*
Ga0181518_1000005165F059669GGAGGVNPYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEVTAPAPAPPENKGRRASDNFLGERIVPPRASRGRT*
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