NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181518_10033252

Scaffold Ga0181518_10033252


Overview

Basic Information
Taxon OID3300014156 Open in IMG/M
Scaffold IDGa0181518_10033252 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3301
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038201Metagenome / Metatranscriptome166N
F045645Metagenome152N
F051827Metagenome143N
F063278Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0181518_100332521F051827N/AVVGGPFDADAAAEIERAIIQRVKADSGLGRGGDDTLHTLEVVPGRKPGFSDFSGGYMENIRWVAAGCPPSGRPDTWDQPDFALTTKEHRE*
Ga0181518_100332523F038201AGGMDVFTRNVQYMTSQVAGEHAARTFQMLQATFPGLRNFDQLRAFARLYVSTGLKPLQFRPLPSEVDPQRLKGELALRFHKGMIVLAPDERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDKGHTLDPEACTPTAVAMFPLELS*
Ga0181518_100332524F045645N/AMGQGLYQCGTEDLNMKLQETTLAALKSVAGVYAVRPIIRGKALALRQGRDGHELAQDEGQSVRVVAVSDVKPSLLSFAAINGIPVKNYTDMAVPKPRAPSAPKPAEVPELVM*
Ga0181518_100332525F063278N/AMKERYLVIGFQLQTRRISLDSERAESATHAMRAVAGMRKAADVLLAWTPAQMRQMADLLTAMTPQQIACNRRSAQFEERAFRASPTAPPPVRTAGPQRQPFLVISYNPVTEAVHLDTELSDSPDAALRSVAGIRVRAHVILAFTPEQLRGMAVNLEDLTAEQIALNRRAAEQEEKAFYAELAARQ*
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