Scaffold Ga0134078_10405241

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134078_10405241

Scaffold Ga0134078_10405241

Overview

Basic Information
Taxon OID	3300014157 Open in IMG/M
Scaffold ID	Ga0134078_10405241 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	613
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)		Depth (m)	.2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014539	Metagenome / Metatranscriptome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134078_104052411	F014539	AGTAGG	MKRVVKLAVLAGAGMTALAFAGNALAVQKLSVSQSTTSLTIKVTQAQTDPQPAKIQIFVPTGYTLNTSAAPGTVIGTTSGSVFARDANIPLPLSGDVVVAPPNTANPPCFTGTHLAVWVLRLQVAGQSINLPIAVDATSGSNALLGSFQRVTCLAPADVPQGTPGRSPNGAQLLEAVFTVNNV

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