NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181521_10322530

Scaffold Ga0181521_10322530


Overview

Basic Information
Taxon OID3300014158 Open in IMG/M
Scaffold IDGa0181521_10322530 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)784
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F027390Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0181521_103225301F027390N/AAHAYASNIPTLGGIATGTYPTPGGPNTAGGSGATYLSLNISGNDAANFMTGQFVTPQFVTDQAMAAQYSSYGRTQQSANMQLPGLTVA*
Ga0181521_103225302F000335N/AMPASLCTAFTELRESAQLQNQYHDGTIQRSQLAQTSRRTFRLSKRLSASVLSALYNFWVSQTAGLTPFAFYNPFDVASGQQIGSNYDPTGNNTQGRVTVVFRGNWAQATDTARTNVQSLELVEVA*
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