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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014159 Open in IMG/M |
| Scaffold ID | Ga0181530_10017595 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5647 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .6 to .7 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035367 | Metagenome | 172 | Y |
| F046997 | Metagenome | 150 | N |
| F063304 | Metagenome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181530_100175951 | F063304 | N/A | MGYMRLNNSTPDRDVSPHVYNLLDQRLAQQGAPLHQLIRTYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLMDDISKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDASKLICLSDVKPVNAYSAFAQRTALIGIQPHEWVRRWVESQRDLFRNKPTDGGYLRLAQRLSGDWPAQPGQGDAFQRALATFLTGIASSTNHSHAVVVQSSLLDTFARAIRRQAQEVGLDRPAVPPPAMSVC* |
| Ga0181530_100175953 | F035367 | GGA | MPAAAKWMFILVLDAVLCGFFGLGIAVLHFLWLEYATVRWPKVRYTDDYQTSFALACAAVLFVLTALRQIKTRLESKSLRPGEIGFLLIFAAIVMVGLTPVPGSNFPQYLYERNYPGKKDTGQEEPKSEEGAQPLKLRRDYP* |
| Ga0181530_100175955 | F046997 | N/A | LSLIGCSLALGAAAGPVTVADVRTERDSIPRALAREKAEALAIFRASRQPLLWQRAMSGISCIENKLQSTPTNAAAESSALLLTLGDKKLTLQAEVLKKIYTACRPVNGLPLYVDRNRRRAPETYLDPEILKGGVNILTLKGTNQIPACLSGEELEDYLQLRCDQKLQTGDYWRELHARKLDDEQLARLRYYDYLDAHVALRSVPVYQCMEIRSRNH* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |