NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181517_10003927

Scaffold Ga0181517_10003927


Overview

Basic Information
Taxon OID3300014160 Open in IMG/M
Scaffold IDGa0181517_10003927 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13844
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F006579Metagenome / Metatranscriptome369Y

Sequences

Protein IDFamilyRBSSequence
Ga0181517_1000392716F006579AGGAGGMTPNDASSTIPCDPDYISGLMQLPAFQNLLAKVETNFYRNRPKEAAELELEGTIRFTLQERAAQAWEILKEARSSGLPMEQAQELISELVYPPLESDDN*
Ga0181517_100039273F004301GGAMAAMQFSLFNAQPQVATVGMEPSVNAQNAKRQFDTLRSQLATAQADLEDVNYNLSIVAMHQKASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWIRHLLFVLNAERRDVLSAIADLEPKVSALSQIIGSAIQ*
Ga0181517_100039274F003764GAGMQIQDDSPYVLDENPAALLAGAEIEATNLSRCLKIVRLWSQSSTLPRSHHDEMVEEEQRLASLYAAILFEIGSAFGLRAVDELKVRIEAACVLDPSECPPAEQGLLFPIPNNSPTGASPATPRK*
Ga0181517_100039276F003942GGAGMLGHRLNPTIHRYEDVELIEVHSEYLECSFMVAKDEWETGKTLLTIFSPLDGNVLGFPHYRLNRDNISAAGPKLPDGTTAQPGMAEAIEMQRHAGHAIYADHLSAMLYGTGLNPARS*
Ga0181517_100039277F003389GGAMQITVWSVAADDDNGTYASVHETEDAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWVHEEVIEALKTYSVEQQTLELSALPAPAPTANERALSRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPLELSEPNSCDHFCDEEDSPLGPNEIDELCERLNMEFCN*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.