NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181517_10009424

Scaffold Ga0181517_10009424


Overview

Basic Information
Taxon OID3300014160 Open in IMG/M
Scaffold IDGa0181517_10009424 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7808
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F017951Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0181517_100094243F003389AGGMEITVWSVAADDDNGTYASVHETELAAYRRLIELTVDSDDKDQVAKAEAFIEAEDLDGLDEWIHEEVIEPLNTYSVDQHKLDVPAASDLATVEESKPITRRELASVLHGLRLMQEQWEPQMHGCTSIGLHDPQELSEPNSCDHFCDEEDSPLSPTEIDDLCERLNMGLCN*
Ga0181517_100094244F003942GAGMLGRRLNPTIHRYEDVELIEVHSEYLECSFLVAKDEWETGKILLNLFSPLDGNVLGFPHYRLHRDNISAAGPKLPDGTTAQPGIAEAIELQRQAGHALYADHLSAMLYGAGPNPARS*
Ga0181517_100094246F003764GAGMQIQEDSTYVLDENPTALLAGAEIEAAALHRCLKIVRFWSQSSALSQSRHDEMIEEEQRIANLYAATLFEIGCAFGIELADELQVRIEAACILDPWECPPAEQGLLFPILSDEAIAASPARARK*
Ga0181517_100094247F004301GGAGMTTMQFSLFNSQPQVATVDAEPSVNARNAKRQLDTLRSQLATAQADLEDVNYNLSVVTMHQRASREGKIDANWWEGAMRFGMLDLDEEPAYRLGSYPVRVMRWIRHLIFTLHAERRDVQSAIAELEPKVAALSQIIGDAIK*
Ga0181517_100094248F017951GGAMAIAHKFETAGLGTAPFRLVRVEMRWFSIPGIPGSKKPGSSCMYCGHPIAECCFLHDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKSQAQADKAAATFREGRDILVRPEIHALLSTQPHPNSYFAAKGKTMADYYEFLLHNSPRGSVANLVGKLREIATEPIQ*
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