NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181529_10006927

Scaffold Ga0181529_10006927


Overview

Basic Information
Taxon OID3300014161 Open in IMG/M
Scaffold IDGa0181529_10006927 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11419
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F003764Metagenome469Y
F003942Metagenome460N
F038518Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0181529_100069271F038518N/AIVTMHQRASREGKIDANWWDAAMRFGMLDLDEQHAYRLGSYPVKVTRWIRHLIFTLHAERRDVQLAIAELEPKVAALSQIIGDAIK*
Ga0181529_100069272F003764GAGMQIQNDSAYVPDENPAALLAGAESEAAALYRCLKIVRLWKQSSAMPRSRHDEMIEEGQRLANLYAATLFEIGCAFGIETADELKASIEAACILNPWECPPAEQELLFSIPSDAAAAANPATARK*
Ga0181529_100069274F003942GGAGMLGRRLNPTIHRYEDVELIEVHSEYLECRFLVAKDEWESGKTLLNIFSPLDGNVLGFPHDRLHRDNISAVGPKLPDGTTAQPGMAEAIEIQRQAGHALYADHLSAMLYGTGPNPARS*
Ga0181529_100069275F003389AGGMQITVWTVAADHDNGTFASVHETELAAYRRLIELTVDSNDKDQVAKAEAFIEAEDLDGLDKWIHAEVIEPLNTYSVEQHKLDVPAASDPAPAVENKHITRRELASVLHGLRLMQEQWEPQMRGCTSIGLHDPLELSEPNSCDHFCDEEDSPLSATEIDELCDRLNMGFCN*
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