NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181532_10000013

Scaffold Ga0181532_10000013


Overview

Basic Information
Taxon OID3300014164 Open in IMG/M
Scaffold IDGa0181532_10000013 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)214381
Total Scaffold Genes228 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)180 (78.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003165Metagenome / Metatranscriptome504Y
F010830Metagenome / Metatranscriptome298Y
F062069Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0181532_10000013143F003165AGGAGMAKVIEFYVPKNFRMARASQLQHGKVIEFCSRTKKSA*
Ga0181532_1000001315F003165AGGAGMAKMVEFYVPKNFRNQSKWVPQVQGGKVIEFCPQTKKTA*
Ga0181532_10000013215F062069AGGAGGMLEDSTSIRVRIDDQGYTHVTVIQWDEDGQEIVYREDENFQCSEAQL*
Ga0181532_1000001370F010830GAGMLSKLLQIVALTACLTPAWGKATSELSFVRQPNTVSIVGPGTVVSVHLLDLPFIKPHYAVKYKTDGGELIEVCTPGKDVLVLEGMHGMLTYSTHPEKILSFRVVEQKLTK*
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