NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181532_10000098

Scaffold Ga0181532_10000098


Overview

Basic Information
Taxon OID3300014164 Open in IMG/M
Scaffold IDGa0181532_10000098 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82913
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (64.52%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F000426Metagenome / Metatranscriptome1154Y
F000534Metagenome / Metatranscriptome1044Y
F003708Metagenome / Metatranscriptome473Y
F020641Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0181532_1000009830F000534AGGAMPQEISVSYQAIKSKVYRLIDSLVVGEKSESEVQESVRRWWALIHPADRPIAQKYLLMVLGRSASALDNMGDAFLSVSSCEVVRPQMADTALPHKRMRLLERMVKESSVRTAV*
Ga0181532_1000009831F000249N/AMFFPHDTFWGWAQVDLAPPHNEIDPNQCAGNAGQYGGVNAPCSLFARYMISGILEVRPFGRTPLRRFMVYGAPAFLFGKTIPKTLYTWSPDAIGIEHSWGIGIYLNKGYEFRLTQHFLFDRLGARDTYLGVADLGTNGPWGRFMTVGVRKTFGTRRW*
Ga0181532_1000009843F020641AGGAGGMSRTAVSRFGTLLAVAIVAFTTFAVTLHAAQTITTPNEAVVNYNLVGGASSSAVTPVSNEPVLVQGVQTAVGYRGVGHVSMLRVPSSFLEWTGIESPASAAITSGYSGTKGTHIVYLDYSHLVDIQVDTTDAFIIHNGNTVTQTGVVTLIW*
Ga0181532_1000009853F000426AGGGGGMKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAENDDDDNGVLAEVDDATLQGDSMAAKAGAGSGSAASSKAARPTAPRWP*
Ga0181532_1000009863F003708AGGAMKLALTLIMPTILLLELSSPATPPGIRGVHPFPAVTSQESEASALSSQVMIEPGARVGSLKLGDTRDRALELFPKKDEDQEWNNSCGTTLDWVDSQNPTGHGDLFIRLNKKGKIFQIESATTRFRTAEGITTFDHADKVAENYKDMRAYTLLTPPVPALGDRPLVYWIDKKNGIAFVFAYYSQEHKRYIYKIIVFEPNKTFCPEEETTSSPKWQAIPSYALEPPAELAPNLN*
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