NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181532_10000512

Scaffold Ga0181532_10000512


Overview

Basic Information
Taxon OID3300014164 Open in IMG/M
Scaffold IDGa0181532_10000512 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39950
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (67.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005096Metagenome / Metatranscriptome412Y
F010842Metagenome / Metatranscriptome298Y
F029086Metagenome / Metatranscriptome189Y
F078990Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181532_1000051212F005096N/AMVNVVSGETFFIHDKNSSTLRKSPGWLCLKTMEDEINQILSRTESKLCAPNGGICTSKTIGLLARRHIRSGEFHYIGREASTRWASEPDLSMMTDAGILDPIHETFRECERIVDPKYLDEIRAEAKQFSTKLLSRKSRVAECAIRNFKNGKNTIKPRTLRKLTMAIHDLQEKNMRN*
Ga0181532_1000051216F010842AGGAGGVTPLARSSWGRFFEEFRCWGCGSQEAYRSRPRGFFEKYVLPLFGLQPVRCERCYHRSYVWSTIQVLERFQADRKQSQSEKAGGSKSDDRVA*
Ga0181532_1000051223F029086GAGMTDKKDYGNHLEKLMNQLADSVLGLSDEAICAETSEVGADPEQEGERTRLVLRQASRILDNANNRVSNLGHTINSNDWVQGKWGYRNQCIDCGSFVSFTTATGEVRGDALDRLCPKNQYEIRRLQASRE*
Ga0181532_1000051233F078990AGGMLHMEANCHPFFGLAATREACIAFRKSLLMLATNFLVGTLFSASRFSFASKGELL*
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Institute for Fundamental Biomedical Research
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