Basic Information | |
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Taxon OID | 3300014164 Open in IMG/M |
Scaffold ID | Ga0181532_10001058 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27384 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .3 to .4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001643 | Metagenome / Metatranscriptome | 659 | Y |
F048483 | Metagenome | 148 | Y |
F069400 | Metagenome | 124 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181532_1000105816 | F001643 | GAG | MLGELMNIPTDTLIDMLYIILAGEIAITANDAREIEQIQRELQRRGDEQCWTFQTIN* |
Ga0181532_1000105818 | F048483 | AGGAGG | MCSPMVTAQAAPTGVSLIQGGCSEICSPVHEEYEAEFNPLHMKWVLVDDANGNYRAQMQWVGDR* |
Ga0181532_1000105828 | F069400 | N/A | MAVDALLPNTQTDFKRRHQKIGDFWLPESNESETKVRVFGTAVLSIEYRDYQITQAGGGTVASPPSEALAATVAEEF* |
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