NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181532_10001874

Scaffold Ga0181532_10001874


Overview

Basic Information
Taxon OID3300014164 Open in IMG/M
Scaffold IDGa0181532_10001874 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19952
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003010Metagenome / Metatranscriptome513Y
F007478Metagenome / Metatranscriptome350Y
F008095Metagenome / Metatranscriptome339Y
F062918Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0181532_100018741F062918AGGAGGVACRSCGSEHQTQFVAEINIHFSGLRNLDKPGVLVFPKLWVCFDCGFTQFTLPESELDLLTGNIAA*
Ga0181532_1000187410F007478GAGGMIRLPILKDEVTFLEKLLPDLETRPDLGHLAIEIKKRIEKIRQEIRALQENK*
Ga0181532_1000187417F003010GGAGMAKFLKKSLLESVPVLVLLGLLAGAVGGLGVGLIQLRAMSSAASSSTTPPK*
Ga0181532_100018749F008095GGCGGMDKSEDQDRGKGATEQDSQNQGGNTSMQGQLGHRDENAELKNADSDLSG*
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