NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181532_10003848

Scaffold Ga0181532_10003848


Overview

Basic Information
Taxon OID3300014164 Open in IMG/M
Scaffold IDGa0181532_10003848 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13376
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029801Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0181532_100038482F029801GGGGGVFALLGKVTPSGLAPFTRRDVAGSWALTAEFGCLRLERLSGDEEVTGGQMFLPVPSSFDYGVTGAGESRELARAVFGLLASELEQLVSVMRRGSFPVLGFSLSDQRCSISAGIIPGYWPHVVISNMALHGNVLSLETFMRVVVSSLPQSRLGLRLPSLQPALKQMMRAVVTPRRGIPYTKEVLALAPTPSWLR*
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