Scaffold Ga0134079_10493745

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134079_10493745

Scaffold Ga0134079_10493745

Overview

Basic Information
Taxon OID	3300014166 Open in IMG/M
Scaffold ID	Ga0134079_10493745 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	589
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Nitrosococcus → Nitrosococcus halophilus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: Angelo Coastal Reserve, California
Coordinates	Lat. (^o)	39.7181	Long. (^o)	-123.6527	Alt. (m)		Depth (m)	.4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F081147	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0134079_104937451	F081147	AGGAGG	MRRLALTLVWLALGCSGRDPTQPTLSIDAAVVQTPATQNIAGHVDGQIIGPSAPCGGGLTEVGTFTGAGGGTFIACITALVQMGNGSLRFELAHTYTTGSGDTFTTTDRVVAAPTNPPAEYLINNQVDITGGTGQFAGASGFLRTHGTVNLQTGVVSVDYHGRISTP*

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