NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181528_10000704

Scaffold Ga0181528_10000704


Overview

Basic Information
Taxon OID3300014167 Open in IMG/M
Scaffold IDGa0181528_10000704 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22368
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (75.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F001742Metagenome / Metatranscriptome643Y
F004412Metagenome / Metatranscriptome439Y
F006318Metagenome / Metatranscriptome376Y
F012478Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0181528_1000070410F004412GAGGMDLEASNAKQPLPPEEAAAKAAVLAECDRLAEAGITFVVVHFDGSGDEGVNEDIKCYATEDYEESEVQDANFSHLQEYLEALVPYGYENDCGGFGDVILNVKTRKIMVERNDRFEDYTTSTYEV*
Ga0181528_1000070413F001742N/AMFMPDTTVGNRRRDKQQIPRIPSKEAELIFAHCEHMLDNSDALHRDLRQAGFSRFLAQLDERILELAVQPDSWGERTRARLIAEVFTDLRGSPAEDASVEEIAEISNIVMPCFLLELGRRRQQIEIEFPANPCDCAARFTLRAGPSYPPRSITSDQLVRLVAETGEELVGLCYFGDQHSREHVEARLAKTTDSKTQPRDSSSPSKTKH*
Ga0181528_1000070417F012478AGGAMYQSRGAISFTPLFTTDDIGLREDASVEHVVKVFLTVGEAMAARWIELPRGILLLQAVPDQPASGAIYLYDRERRIFFFVDFVDGRDDTMTAAEFDQLVAEYDLVSWTANPAFLSAGVQNPGMA*
Ga0181528_1000070428F006318AGGAGGMWRQPPIWEPQGTKFRPYSITTLIFFYIGKFLGRLFGHLFGRRH*
Ga0181528_100007046F000208GAGMAMRIRVTTRADLFEKRKQQHIERGYRIEDERPIPVNGFCSFVAVSEIPDGIGELVTQALDGMPR*
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Institute for Fundamental Biomedical Research
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