NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181534_10000299

Scaffold Ga0181534_10000299


Overview

Basic Information
Taxon OID3300014168 Open in IMG/M
Scaffold IDGa0181534_10000299 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35728
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (67.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012243Metagenome / Metatranscriptome282Y
F016839Metagenome / Metatranscriptome244Y
F020157Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0181534_1000029916F012243N/AMNALWFIPSFLLLALLALLIRRGVYKSFRCFFAYSLFAVAADLARFLVRKSPPAYYATYYVTEAGYELLGILVMYEVLRAALAGLARAWTVRLIFPAVVLASILLSLARVQTASAHFNRLTYYILAGEVATRSSQVIVFAGLVTLIPLLGLRWRQYAFGIATGFGLYSTVMLLTTTAFSDFGTRFKFLWGLTSLVAYSVTVIIWIWFFSAAQKPDTPILELLAPSPGDLKHYKDALRRMR
Ga0181534_1000029917F016839GGAGGMFSIIFTWVVVAWGALSCIYMLRSAWRRFPHRDVDDVIPFLHPVDLSLAESLLDPATDFEFRWKLAPRQFRAAQRKRLRLYLEIIRRMAHNSKVLVEYAATEKNHADPGRAALASALQEKAIEVRLYALLTGLKIRLWLLLRADFLRLTPVLAELRTVGEINGLHCYAALKGTAEAAFVALPLDEREKMTRNL*
Ga0181534_1000029937F020157N/AFPLRRVSIVHGRYVAATPFDGVVAQPESQSQSASASSGGN*
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