Basic Information | |
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Taxon OID | 3300014169 Open in IMG/M |
Scaffold ID | Ga0181531_10000007 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 225621 |
Total Scaffold Genes | 196 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 126 (64.29%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .1 to .2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012826 | Metagenome / Metatranscriptome | 277 | Y |
F015365 | Metagenome / Metatranscriptome | 255 | Y |
F073826 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181531_10000007182 | F015365 | N/A | MRARTFILMAWTLLAFPALSLAQDSAAPVPPQTEAEKSALLDRVLNNQKMSDRAMDLYERVERVEQHKTSGDPLAADVKISRVVPAGTGVDHIPIGPDGKPTNADAYHAELVKLEKALSWAADDGHGQQDAYEKIAKKRKERDELIQATRTAFLYTFVSTEMRDARVLYKYSMEPNPAYKPTNRTTAIFAKVKGFVWIDPAAEQIARVEGEVTGDITVGLFLAKINKGSHFMQERYEMLPGLWMPSFSQYDFDGRKFFSNISIHERTFYSQYRRIGAPKEALIAIRAELGMAVGNVADR* |
Ga0181531_1000000762 | F012826 | N/A | VFLSTAFSSWVIIANRVPVLDRFALLRNLVAVALLGLIALIPVVRFWRVPGNMLSSSLVGWLILSLTYRILSMDFSGLEGRFSAVQIFVLGTVIYLLVVTLSWLGTIIRRARAANESRPHHHPS* |
Ga0181531_1000000771 | F073826 | GAG | MGNWYTNISVKGAPQSDVVALLEELGRRAYVTPETSGWVVVYDQQTDEFDLGTLESLALTLSTRLSCTTLASCNADDDVLWLALYENGILSTRYASSPESFEDGDEFPDQKEAAEVLSRVFQKPQHARDVLRLLRKSRGFLALLSIYFKIRFAYAVEVDRHLDLANLLGMPRAAVGLGYRYVSKGETPEGIDREALRRTMV* |
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