NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181531_10001250

Scaffold Ga0181531_10001250


Overview

Basic Information
Taxon OID3300014169 Open in IMG/M
Scaffold IDGa0181531_10001250 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16188
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (35.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F006125Metagenome / Metatranscriptome381Y
F006229Metagenome / Metatranscriptome378Y

Sequences

Protein IDFamilyRBSSequence
Ga0181531_1000125010F000512N/AMERHRHSKGKPTPRIAILRETHDTPPQVAARMAHAGGFNRYGEPNYRAIWGWNRLAWIGGKFTDRDERGDLLREVVELRREPKYPAVNRWHIERWMSPESYGSPRQWYAQSIERENGISVPALGPYPSRGDYEHCFTLEDPQGGFLQLTTAAAEHIAHAIEYARKSPRPAGKRRLNDRQQREEAAYDQYAYDVLDDAVPAFHQQPFVTVL*
Ga0181531_100012502F006229GGAGGLLQQDDVVLLVNISPEKWPPRQRTYFGSLEIRAPQPGEPYALTPVRGCTGFLDFGDKRVMDYKITAREIADDLAREINSDSGDASFHGVFVAAGETPTPEELQDARERLDNFHRRLVDAADLEWERTKNPMFITDLERRAARLLGLEKPWLYNAKPLDDCPVCAEKIKPGVAVCKSCRAILNPEKAAQYGLFPASAAHAATQPATPAQHATNPAPPKKPHSTHEAGK*
Ga0181531_100012507F006125AGGAGGMSIQLTLLPSNEDGSGSNLYYAIAQLTFSGSYVVGGDTIDFTTVADKLPSTQIIQAFADSQNGASGYYVPVAGTALNNWKLKCFTGGGTELTAVAYSTTFVATDVVQLTITARKLL*
Ga0181531_100012508F000696AGGAMPVVGSSAYNTAGQITALVRSLLNDAAGNLFTDTVLLPYANSAYRKVQRALGNAGGGGFIQDDALLVVTAVTAVDPSLQVSITDATAPPNQLPTDLLVPVKIWERPNLSTDDFTEMVDVSQHGGLPSREQDTTLSIWEWRADGLYFLGATQDTQIRLRYSKAFPDFTDSTSPVLIRNAQEAIAYATAALAGWARGSPLSERWDEAASDALEDLVAAAVRREQNSQRRRRPFSWRTGYTPF
Ga0181531_100012509F000739N/AMRLTHTQIWLRGILAAAISGAAGGVLTGFAAVGIDPQHFNLQSGVSATMHIAEAAALINAVIGVAAYLQKSPLPDS*
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