NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181531_10078986

Scaffold Ga0181531_10078986


Overview

Basic Information
Taxon OID3300014169 Open in IMG/M
Scaffold IDGa0181531_10078986 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1948
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005822Metagenome / Metatranscriptome389Y
F011771Metagenome / Metatranscriptome287Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0181531_100789861F005822GGAGMKVSEQPNAVNGAESIADSKIAHPPASEGRRSRAVTNSKPTLPRNATRRRRNRQDNSETSGEERFFLASGGGDGSVPALGRECGSEAEAIIDAFRERVNFYRLSEFQARAAVGPSGEPILRRDGLKKNNPAS*
Ga0181531_100789862F014867GAGGMRTLFPSSYDRADVLMSAGCSTFVSAALILVIPRFGILLLEILLGLFFIGCALMARKRLRTQALGQDSYDKSRDARTRWFDRYDVFMILAVVVVQTSTAGLLRKAGLAEGTVGILPLFLFAAGILLKPRAVEFIEGRRKTRQASRNGNNLTDFAAHAPASEAGTKTVVHAATKNGDLE*
Ga0181531_100789863F011771N/AMIDSKAGPKGENGTASGPTRFGGLDQLDWLMIVISVLLGTIAKQHHFLDLSDRFLEWVLPFLLMVAGYRTRRKVTELIESWRAKAKSPSSE*
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