NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181531_10105396

Scaffold Ga0181531_10105396


Overview

Basic Information
Taxon OID3300014169 Open in IMG/M
Scaffold IDGa0181531_10105396 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1686
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F004392Metagenome / Metatranscriptome440N
F082398Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181531_101053961F082398N/AKWFDRYDVLMILTVIVIYSSVSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVRFIERRRKDRKAETHDGRSHMDVGEKQEIARKETVERCQ*
Ga0181531_101053962F004392AGGAMPVNGPETIADSKTSQPVPSEARSGRAAKNAKPAVGRGASTRHRRDRQDGSETNGEERFFLASANRSGDVPTLGRECATEAEAIIEAFREKVNLYKVTEFQTRADIGRSGEPILRKETLKKNHPAS*
Ga0181531_101053963F001528AGGAGMSEKNQIVVVLIVALFLGALIDRSTALNIVAGVVLLWTLQNQPVVFECIRKLFSFVQRRPSVREYRGGVTTFRAS*
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