NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181535_10051921

Scaffold Ga0181535_10051921


Overview

Basic Information
Taxon OID3300014199 Open in IMG/M
Scaffold IDGa0181535_10051921 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2821
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0181535_100519211F014350N/ARTESEAKSMATQVSPLEAPAPSAKPGRRNSKTKEHQPEQVAPSDTDFPYAGQEADPQQELDTLENQAEAPVRGSYLREKDGYNALSPEQKAVCDKDFESYLDRLTRPIEVKEGETRQDAVQRAKEEYCAARQEHTAHHREMAKVMLASKINCLNSEYPRNSFSLRSPDIAKEFLATAFYHNASAAKGLTSFDKDVFASSKKAALREFSALAASVENGGSATKDFNNTFALCIERPPNGAPNQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELDR*
Ga0181535_100519212F004581GAGGMKQAEIYNGHAGRFHRMAEHIELSMTPQYLQRHGGPDPITTNDITLATTLMNSVYGYPAGKQAVLELSAGMIPGEERSQTVRGLFMMTAGCSEYDQTVKYTILPLPGRELETANLLRATAAYSLERAEARSHTIPVFSRQPAQLER*
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