NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181535_10272434

Scaffold Ga0181535_10272434


Overview

Basic Information
Taxon OID3300014199 Open in IMG/M
Scaffold IDGa0181535_10272434 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1016
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005865Metagenome388Y
F099703Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0181535_102724341F005865GAGGMPAPEPGPEWVLSGANPRSDSATESELSKAARSAWPKALAHVRQVQARNPFDDDGILVAEVWESVLQSVCRTVDRMNGKPGEIGDLEAYLLGSFYHRLRRALKKEQRREEMIHLVSSAEELEVLGKTSHAEQHDIEGTLHAQEILDRMDDWSRKVWIAREYGYTWKHIGRVLGIPGDSVMLRFR
Ga0181535_102724342F099703GAGMEDGINPDRKKQSQSFRWLHEIDQILVVGMKYGPTGTQEAVKRVRQLTPELVPAQVWHRMRHLRDKERGKSAPTVDWSESAI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.