NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181535_10492794

Scaffold Ga0181535_10492794


Overview

Basic Information
Taxon OID3300014199 Open in IMG/M
Scaffold IDGa0181535_10492794 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)709
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018090Metagenome / Metatranscriptome237Y
F038327Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0181535_104927941F038327AGGAGMRHSRFISSTPLIARLLTGLLFAILAVVVPLNAADSHSWYDVSKEVTLSGTVSSVFHKPAPGMIWGSHLMVETVSGRLDASLGRFGLEGKGALSVTPGQQIELTGIMKTVRGKEVFVVRSVKANG
Ga0181535_104927942F018090N/AFLPPLRSVPLPGHITGSEDGTILTFAEGPVTGSYTVGSDCRGTATITPKGRSEMHFSLVVVDCGKEMLAIETDADTVVSGPLVKGN*
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