NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181537_10060391

Scaffold Ga0181537_10060391


Overview

Basic Information
Taxon OID3300014201 Open in IMG/M
Scaffold IDGa0181537_10060391 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2569
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037313Metagenome / Metatranscriptome168Y
F042445Metagenome / Metatranscriptome158Y
F060168Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0181537_100603912F060168GGAMDTKKAFYKSKAFYGCVSTIVLIIGDIVANGVNLGNMTALITTGFALYGRIVATTPLGLSDQSEDDVEDAKADVRKSTVAVDADHGN*
Ga0181537_100603914F042445GGCGGVLLSKSFPAFLMLAFSGCAQVHEKMFTAQCAVGRTPLPGELAPGTAIALDVSTSPIPLLFAPHRVILRCDSAGGVTMNIETPVDTGLSQLSTPLATAASHVMYAP*
Ga0181537_100603915F037313AGGMKVRVLVQRAFPRAIHDSVFVLLFAVALAGCAQQGGGLLQPTPKQIISGKNTIVPSAAALSMEATNFCNAQAQVDYAGLVLYCEGKTPTLPLSISTNYQTESSQFSCQVYGYTNSSNQLIVPQTVTLGNCPTGTAPAPVTAPSGASAAATVRS*
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