Scaffold Ga0172380_10201078

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0172380_10201078

Scaffold Ga0172380_10201078

Overview

Basic Information
Taxon OID	3300014205 Open in IMG/M
Scaffold ID	Ga0172380_10201078 Open in IMG/M
Source Dataset Name	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1557
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	43.442	Long. (^o)	-80.577	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008189	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0172380_102010784	F008189	AGGAGG	MDYQKELKRLQEGGNYWKPKVGQFKVKALSELEEADPFTRKGKDGAKDEVTPQAKIKILVGGEEKVWTFSLGVTLASTYGQLVKLATEHGNTLLGYDFNVAVKSDGNKNDYTVFG*

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