NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0134346_1000025

Scaffold Ga0134346_1000025


Overview

Basic Information
Taxon OID3300014293 Open in IMG/M
Scaffold IDGa0134346_1000025 Open in IMG/M
Source Dataset NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe George Washington University (GWU)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58188
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Maryland
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081455Metagenome114N
F099453Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0134346_100002537F099453N/AMLRRKDMNRFDIIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVELHGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRNEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNEVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYIDRLKTHYAFMVCENRTYINSVNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0134346_100002541F081455AGGAGMETTNTENKIIFTNDETTAFDNFISYATTRKLPEGYDIPPVEEIGMQNIEIVDAAEEAIQQPLVNTDSSIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILSNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK*
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