NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075305_1132212

Scaffold Ga0075305_1132212


Overview

Basic Information
Taxon OID3300014295 Open in IMG/M
Scaffold IDGa0075305_1132212 Open in IMG/M
Source Dataset NameNatural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLB_D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: Fairfield, San Francisco Bay, California
CoordinatesLat. (o)38.197102Long. (o)-122.010033Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055469Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0075305_11322121F055469GAGMLKRTVVILAAAAFFWGAVATQTAQARDDIWDLMNPSWWADKVFDDDHDDWWHYRHQAYTPYWGAPYAQQPRVIVIQPPETKAQNPETRLPE*
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