NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075342_1001535

Scaffold Ga0075342_1001535


Overview

Basic Information
Taxon OID3300014320 Open in IMG/M
Scaffold IDGa0075342_1001535 Open in IMG/M
Source Dataset NameNatural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4412
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: Fairfield, San Francisco Bay, California
CoordinatesLat. (o)38.198971Long. (o)-122.026955Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011852Metagenome / Metatranscriptome286Y
F080214Metagenome115N
F082926Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0075342_10015353F082926GGAGGMPDISATEQSEQSNIVTWKATSIGTAIVLAVFLFLWL*
Ga0075342_10015354F011852N/AMPLFSYFVVMGPMLALALIYVSDRIEPQGSPVPTSQIVGIAKPFKSEPERSPCTITGTNFAAAYKPVSARAATEPKPIRRADSLPQQRPADNAETRNVPRWKTIAQNPIDALMTIH*
Ga0075342_10015358F080214AGGAMNADAGSRDPVATFGMARKKSRNSILLRFTDALKEPRRRQARRVIATYVHLLADRDAPNDDNHH*
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