NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0163163_11502082

Scaffold Ga0163163_11502082


Overview

Basic Information
Taxon OID3300014325 Open in IMG/M
Scaffold IDGa0163163_11502082 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)735
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008262Metagenome / Metatranscriptome336Y
F035648Metagenome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0163163_115020821F035648AGGAMNKHSTPKAGLDTFDGDASSRADREFLASLSDHPLMRNPLYSVPPPPRPDYDGCTTVDERTGAQQACFPAALDWMLVNYAYYTDAFMGKGGIVSLVDGKIGTIASLRGFMQPHTIVEEGPRGGLKKTSVVDTWMTHPLRAQ
Ga0163163_115020822F008262N/ATSRLFALDAATCVEMQDLGTMMTVAELERRMRARKAGANATLRCSGSFHDSTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFSGQLQARNPFQ*
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