NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157380_10005815

Scaffold Ga0157380_10005815


Overview

Basic Information
Taxon OID3300014326 Open in IMG/M
Scaffold IDGa0157380_10005815 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8636
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006090Metagenome382Y

Sequences

Protein IDFamilyRBSSequence
Ga0157380_1000581510F006090N/AMQRKGPALPLPRLDGKEVLVGPDPSIAKVKGVMFGGRKQFLTDVGGDEVFYSVLAKLSPRSLQYTRTPLASSWCEFESLIELDRAIYDTLHAKYPNVLALIGAASAELGIGRVYKSLDTVELVKYMENIALFNSQYQKFGRVKFEKTASGGKMIFTDYPVYSPIYCASGAGYFLESILRHGGTEPSVVETKCQTLGDSSCTYEMTWK*
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