NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182000_10000148

Scaffold Ga0182000_10000148


Overview

Basic Information
Taxon OID3300014487 Open in IMG/M
Scaffold IDGa0182000_10000148 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Magueyal (Ma) metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13404
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Magueyal, Guanajuato
CoordinatesLat. (o)21.195Long. (o)-100.439Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004746Metagenome / Metatranscriptome425Y
F035469Metagenome / Metatranscriptome172Y
F074002Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0182000_1000014810F035469N/ALLVEHESIDGQNGFLLPFGYYLERDADLLILHRSDNSLVAEFSAEGVDFFEVELAVWADAD*
Ga0182000_100001484F074002AGGVRVYDELTSGEAVVDLSPSQALSRAESFLIGQGYVVAHRTLTTLMAERKGSEGPTGQERVPKVVVVAVPQLDGGVRIKVGGDDRGFQGRQGLWKLWAENLPKRH*
Ga0182000_100001489F004746GAGVVHVRHGHWKDEFAGMRGTIQERWGNSEYAAVEVLLEDGSYELFWLADLSEVDERITV*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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