Scaffold Ga0182000_10028194

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0182000_10028194

Scaffold Ga0182000_10028194

Overview

Basic Information
Taxon OID	3300014487 Open in IMG/M
Scaffold ID	Ga0182000_10028194 Open in IMG/M
Source Dataset Name	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1544
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location Name	Mexico: Magueyal, Guanajuato
Coordinates	Lat. (^o)	21.195	Long. (^o)	-100.439	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042741	Metagenome	157	Y
F076883	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182000_100281942	F042741	AGGAGG	VKRRTVKIIERVQAHYEVQDVEMGKVYRWRPETVVVECTCGEQLTLSALKTTCPKCGADNAPIVEEMRVARPEDEGDHPWRYLQPHTPMRGA*
Ga0182000_100281943	F076883	GGAG	MKSSMRVLLVTLALLLTLAVSALPAAAHDFGPAFFCDAQSFSNCTDTSNPALAEDTFSCEGTVRDIASCRNLLTGESAPYCVFMGEDMAEGVSTNRDAYLCGGGPERFNDAV

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